Add-ons

Add-ons which work with older Vanted versions.

FBA-SimVis

Dynamic visualisation of constraint-based metabolic models

FBA-SimVis is a VANTED Add-on for the constraint-based analysis of metabolic systens with special focus on the dynamic and visual exploration of metabolic flux data resulting from model analysis. (Publication)

PetriNet

Overview of PetriNet example in Vanted.

PetriNet - reconstruction, simulation, and analysis of biological networks using Petri nets 

PetriNet is an Add-on to handle discrete and continuous place-transition nets of varying complexity. The editing of Petri nets and the transformation of biological networks into Petri nets is possible in an interactive way. Simulation and analysis are supported by different visualisation and interaction techniques to capture the properties and behaviour of Petri nets quickly (e. g. interactive animation of the switching behavior, interactive exploration of invariants and the reachability graph). (Publication)

GLIEP

Overview of GLIEP in Vanted.

GLIEP - navigation and exploration of interconnected pathway visualisation 

GLIEP stands for "Glyph-based Link Exploration of Pathways" and helps to guide the navigation and exploration process of interconnected pathway visualisation as well as providing insight into the overall interconnectivity. (Publication)

Multimodal Datahandling

Multimodal datahandling is an Add-on for the VANTED system and enables to import, handle and export multimodal data, such as volumes, images and networks as experimental data. The Add-on is more like an utility Add-on used by different Add-ons. (Publication)